Scaffold Ga0187824_10001348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187824_10001348

Scaffold Ga0187824_10001348

Overview

Basic Information
Taxon OID	3300017927 Open in IMG/M
Scaffold ID	Ga0187824_10001348 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6056
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016741	Metagenome	245	Y
F045975	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187824_100013484	F045975	N/A	VPRYEITVQGHGIALPLEDSVAVGFLRLVQLRAATPLEAEVRAVELVRSDWAASPHAARNLGAAPYLTISRIGLLSWWHRLLGAPRGYIFFGHDGIQVPSPER
Ga0187824_100013486	F016741	GAGG	MRSFASTFPELAFDLGSELRATGRADIARELEASTVKTVSYDPETDAGLIALEPQRGLNPVERDVVGQKLGQVIEFGGARYARLRLDNFGRVVAVDLQAPPSNLRWQIQGR

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