NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1015624

Scaffold Ga0187849_1015624


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1015624 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4575
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 21-70-11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_10156242F014894AGGAMRMSIGVPGFSIYFEHHQVKPFIQDHSKKAKDLFDERVVPAVLRGTCKALEVVANNTADAHDYLIAKLKTKQPA
Ga0187849_10156243F045709GGAGGVNLTPSQKGSFLAGVGLWVLIWASVWKADDIAEAMRIQRWFNANRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLERLLRQKGTASATFQ
Ga0187849_10156244F070426GGAGGMILELIVAAEASVFSASWIRRSRTRRQEILLGGSTPEMSLPFLDQYLRQQTANPTKFQAFAAQKLGAVCRRVVHTQAFELLVLKLIQSASRRYRRESEISKVEVIL
Ga0187849_10156245F036810AGGAGMSLQSSEGTCVSTPAIWLALAAAKCKAIQLSIERRSFERKLETIVRAANAHHSCGQSPGTTQFKLLRKCADDLCANFAQRWDISPKLLEAQIPAITRLKSLADPPPKPEPVVLVSLGVAGAVALFFLVGVLAGLASVGYHMIGGR
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