NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1022314

Scaffold Ga0187849_1022314


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1022314 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3504
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F032938Metagenome / Metatranscriptome178Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_10223143F036810AGGAGMNNTRRVNDTRVRAFDALHSLYRTIQLSIGRRRFERHLALIVQAANAHHAGGRVPGERQFKVLQEQADRMCSSFAQRWDIPPELLEAQIPAITKLKSLADPPPKPNLSPRVALGIVAAAATFFLLGVLSGLASVGYHLVGGR
Ga0187849_10223145F045709AGGVNLTPSQKGSFLAGVGLWVLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIFLILPCLDAMHRRRGTATTSLR
Ga0187849_10223146F014894AGAAGGMRMSIGIPGFSIYFEHHQVKPFIKDHSKKARELFNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKPKQPA
Ga0187849_10223147F032938AGGAGMQKFLVVSYDDDQQQWFWDYVAAKRAEDAVAHVCERRPYVIAADAASLSQVQGIARDMKSRSIGRIIHQFNSDAARAKE

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