Basic Information | |
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Taxon OID | 3300017929 Open in IMG/M |
Scaffold ID | Ga0187849_1022314 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3504 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014894 | Metagenome / Metatranscriptome | 259 | Y |
F032938 | Metagenome / Metatranscriptome | 178 | Y |
F036810 | Metagenome | 169 | Y |
F045709 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187849_10223143 | F036810 | AGGAG | MNNTRRVNDTRVRAFDALHSLYRTIQLSIGRRRFERHLALIVQAANAHHAGGRVPGERQFKVLQEQADRMCSSFAQRWDIPPELLEAQIPAITKLKSLADPPPKPNLSPRVALGIVAAAATFFLLGVLSGLASVGYHLVGGR |
Ga0187849_10223145 | F045709 | AGG | VNLTPSQKGSFLAGVGLWVLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIFLILPCLDAMHRRRGTATTSLR |
Ga0187849_10223146 | F014894 | AGAAGG | MRMSIGIPGFSIYFEHHQVKPFIKDHSKKARELFNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKPKQPA |
Ga0187849_10223147 | F032938 | AGGAG | MQKFLVVSYDDDQQQWFWDYVAAKRAEDAVAHVCERRPYVIAADAASLSQVQGIARDMKSRSIGRIIHQFNSDAARAKE |
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