NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1067401

Scaffold Ga0187849_1067401


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1067401 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1602
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_10674011F028392AGGAGGMSNTIAAIRLPESLRNGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFATRKEVHKYCPRYRYFQGEGILDFSTDCASGQLEPGDLGKPPRPKRGRLCQECCFYLGEPEEQVPQTTLGGIPNHPRLPA
Ga0187849_10674012F003859AGGAGMDELNTQKRTTSEDVSFTAYLLPGASLYKSIKLGWHWRRLRWAVAAASEAAQGHEANGMRAGAQEFKTLYSEVAKRVQEYSHESGDPIGTLKAKLPALCAIERLANPDPGVPQNKLGLTLGIIITTALGSVGLGALIGLATGIAHWIARLFA
Ga0187849_10674013F016632AGGAGGLTGILELFALVELGSGIGFLASWRNKVLKAKVNFFRQPDNKPSPFDKVLRAKVGRAVTRQDHLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGGRPW
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