NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187877_1004733

Scaffold Ga0187877_1004733


Overview

Basic Information
Taxon OID3300017931 Open in IMG/M
Scaffold IDGa0187877_1004733 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10305
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007097Metagenome / Metatranscriptome357Y
F008672Metagenome329Y
F016487Metagenome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0187877_10047331F008672GGAMAWISYYNAGLSKQVVRQLLAVVNRDIQAALDLVSGVPGSFAPFAEYDLALLPVQQFPAMLLTPDTVTFDEEANCTLHQTMRLTCVIAVTHQDRNTLAEMSQDYVRAVRAVLDTLWESTPGDFLLTNLPLPSPPFPSGALSPGLASGKLMKIFAEGHTFEEIRRRPQSGFAMAVTMTILVELEES
Ga0187877_10047336F016487GGAMIQGNQTWQLALAQPQKQAYYTVEIPDFSIAIAGFTASAQAATMPSGYGVTQYGVGLYGT
Ga0187877_10047338F007097AGGMSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTIPTPIDPDDGYAYSRAECQFIWMIYSNRSPAPGFVPGQATPPAQSTSQPGQLYNFPGGWDINDATGLVTFRTTYWQNGNEVVNNDGIIKVYAVCLRLSLNNAN
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Institute for Fundamental Biomedical Research
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