NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187814_10093704

Scaffold Ga0187814_10093704


Overview

Basic Information
Taxon OID3300017932 Open in IMG/M
Scaffold IDGa0187814_10093704 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079500Metagenome / Metatranscriptome115Y
F099715Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187814_100937041F099715AGGMTSYTAWLRREKGYNLRMPRAALLITLLAASVLSGSLQAQRTGAHGNAAGQRIRSGIVGWRGSSNRFLAIRSHFHRNGVGAFFDSYFLPYDEPSESGQPDAETATEGPAGPVVIPRTPEPRVPKAQVIEIPGVANPNAKMLPPTIFILANGGRLETRRFLLTASNLSFSLDRRQRTIPLDMVDLDATIAANHERGIDLRIPADRNEISLSF
Ga0187814_100937042F079500AGGAGGMKTLTHFSRSGDRHFRTHPHHHLFSLIASFVLAVLAVLMLTVTAK
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