NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187803_10135674

Scaffold Ga0187803_10135674


Overview

Basic Information
Taxon OID3300017934 Open in IMG/M
Scaffold IDGa0187803_10135674 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187803_101356741F070426N/AASVLSASWIRRSRMRLREILMGRSTPQITLPFLDRYLKQQMSNPTRFQTFAAQKLTAVCRRAVHTQAFELLVLKLIQSASRRSRRESEISKIEVIL
Ga0187803_101356742F045709GAGGVNLTPTQKGSFLAGIGLWVLIWASIWKADDIAAAMRIQRWFNATRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLEKLLRQKGTVSSAPQ
Ga0187803_101356743F014894AGGAGGMSLRKGSTTMRMSIGVPGFSIYFEHHQVKPFLKEHSKKAKDLFDERVVPAVLRGTCKALEVVANNTADAHDYLIEKLKTQQSA
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