NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187848_10009816

Scaffold Ga0187848_10009816


Overview

Basic Information
Taxon OID3300017935 Open in IMG/M
Scaffold IDGa0187848_10009816 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5655
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F011724Metagenome287Y
F062368Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0187848_100098163F008672AGGMWISYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGAPGTYAPFAEYDLALLPVQQFPALLLTPDTVSVEEQANFTLHQSMRLTCVITVTHQDRNALAELIQDYVRAARAVLDSLWELTPGDFMLTSLPLPSPPFPQGALSPGLANGKLTGLFAERHTFEEIRRAPQSGFAMAATMSIVAEIEEN
Ga0187848_100098164F011724GGAGGMSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRSALYARGIDPDAMALTPDQANFLRALNRDGAIADLADALQGNVSLQAGEDAHAAQRRQSFERQVAEIKQGLYDKFFSQLARTVEIEPTLGGTAGGETDGSTARDRSENKAFSKDQVF
Ga0187848_100098165F062368GGAGGMAVSVSLTEQFIEETLAGPYVKNAKLIVTGLTTGGNNSVPHGLSDGKGNAATPITVSIEPSSNNNFYEYQAADSTNIYVGAGAGSGTSCNIYVEY
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