NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187853_10002869

Scaffold Ga0187853_10002869


Overview

Basic Information
Taxon OID3300017940 Open in IMG/M
Scaffold IDGa0187853_10002869 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13863
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011725Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0187853_100028691F011725AGGAMYRLERENLAPALPRLRSVRLLSGLALLTLWAPTPALAWGGQVRLTRRYQSGQKMVYTTKTHTKAVIHSEPPELQNFLPPLPTNFSVQQQNTVTVKAVHSDGSADIENHFDKFEFQSDLADRVPANFRDPAVSAQQEISEHVAGQDIVAHFDRNGRLVGFEGGEGLFEQLDMAYREPLRQALRFFLEQLGGDGLYPEHPVKPGETWKSKFDSPASAAYPYNVEGENTLRYVGKTKVGGVKAAVLEFSFVDVVKPAPDALGKAEPLAQLESHGLGVDMRIDGQGKGRVLLALDDGRVLQNHAT
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