NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187853_10313553

Scaffold Ga0187853_10313553


Overview

Basic Information
Taxon OID3300017940 Open in IMG/M
Scaffold IDGa0187853_10313553 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043015Metagenome / Metatranscriptome157Y
F086702Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187853_103135531F043015N/AVIGLPLNVTFPRLKGIRWRYCTRWDEGPAAVLGMSMLRLGICRPDDWSGSAVDFVERGFRRFCSRNRAVDAKRVWVGDLRITDSLFELTEQERNQVEAGREGMTDHLYLVGDYEAAASIPIGATLARLEAEHALLPAAFYEVFTTNLYKWMRVYDYLDGQEHAETWMEDLSEDELEASVYRKVDMEIPACIKTHSKKLK
Ga0187853_103135532F086702N/AGEILGKAFDSLNCARDGSELGDRYLPPSGVVIPPLV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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