NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187819_10021290

Scaffold Ga0187819_10021290


Overview

Basic Information
Taxon OID3300017943 Open in IMG/M
Scaffold IDGa0187819_10021290 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3774
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium Ae_b3b(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104586Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187819_100212903F104586GGAMAQSRALLLRLAGIAAVGLLLHGPAFAGELGNIQQWPNSQAEGSSFRLASPIPGMDMGAEINAIYDSLPATGGVIAVQQSASFSTPIVFGTKDKPVLLTGLPADIVTLTYTGLSGVAMTFDYGCRHRMGHGLRDLTLTGPGNSTKTVGVKFGGTNGAEGIEFRDFKIQSFGTNLEMGSYTWLANFQHGMVRDGGINLLLPSWLTEAGEQIVFNHVTFADAPAPHTNSVWVQGGNQEVIFTDCSFDQAQLRIGNGGNTAAQVVVKGTHFENPNFAWPDSVNYDYIVVDQHAGNYLRISDSYFLQAAPTNGPAQFMNVWGGKVQFTGVGMYTPAGSPITHFCLLWNGATADVYGFNDLSGNISGGSGWAQSN
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