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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017943 Open in IMG/M |
| Scaffold ID | Ga0187819_10039349 Open in IMG/M |
| Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2797 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039899 | Metagenome | 162 | Y |
| F098393 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187819_100393492 | F039899 | GGA | MLYFVIGLPGRFTEWCDAATAEIARRALGPTELVRANTLEEISLEMIRTGASRAVVASRQPGGRLRSALVEAGRNFLVVVEDPRMALAEAVQRRQNDVCTATQLVASSCAGITRYVSSPGALALFRDRDGANPVLTAHAIARHLALTVSDATVVEIVDNLAAAGLTPEQSDGADRWDGLGADDQRVVGGALDPFVAYLATGDLPPIIWERELFFLGDRPGERATGIVDVTGRARCLLQGPHIMLPPGSWSLFLNLLFSREATEHDFLVEVVADRQVASCMIRPQAEGVFNLNLAFALETATDHPIAIRLSNQRAAFDGTVILIGAVLAKNGAALAETRSVAVAAAHG |
| Ga0187819_100393493 | F098393 | N/A | RLTGEVTLTTWPPLTRMLGYDPIAPVLDQVALSLVETSTAHLVFGARQPDERLRAALTAMNVRFVVALDDPRFAVVDILGSTNGDLRAVTRAIANSCPLVMRCASSPGAITIRGNRAGIDAVDAVAAIARHFDFPLGDGEAQGIVEELAARGLCYAPKAPEEEAAWKAGTAHRIVEGTLAAYTKYFAGDDLGEIIWPRELFIVNGDSGKGLTDAIEVRGGLRILIFGPYIHLPAGSWTARVLLGFSPEAAGHTFLIDAHSGRQLGSTSFQPVRAGVYAVDINFSLDEPSGYGLEIRVWVWSDYARGQVAFGHVILRPLAMRQPETITASQDDFRTVLDL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |