NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187786_10074874

Scaffold Ga0187786_10074874


Overview

Basic Information
Taxon OID3300017944 Open in IMG/M
Scaffold IDGa0187786_10074874 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1082
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002959Metagenome / Metatranscriptome517Y
F003736Metagenome / Metatranscriptome471Y

Sequences

Protein IDFamilyRBSSequence
Ga0187786_100748742F002959GGAGGMEKHIPKYVTQARAAYLLGLPVEELSRISHETGIGHMERAGDVVEWFFTYEELQRICVWAAQEHAVTH
Ga0187786_100748743F003736GGAMSSNKANLAGLASPEQQSEMKSVLQGTWPPLKPLPVFRYETPRYRAKIDFDRTRGEWVCRKTSLPSNAVQEWRGELREITLALPHTEAETLIEDSEQHEQESDKDTNRRLQAIREWRETCQNGARYFELRNYLSENQRRETDDILRLSLTARQLQFNSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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