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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017946 Open in IMG/M |
| Scaffold ID | Ga0187879_10000007 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 283881 |
| Total Scaffold Genes | 244 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 187 (76.64%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000269 | Metagenome / Metatranscriptome | 1410 | Y |
| F000378 | Metagenome / Metatranscriptome | 1211 | Y |
| F006274 | Metagenome / Metatranscriptome | 377 | Y |
| F080971 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187879_10000007112 | F000378 | GGAGG | MEDRAPDVSSSATQPSLSSQQATSRHFEGRGAWVLTAYGISGLALFGLLAYFFSDFIAH |
| Ga0187879_1000000723 | F000269 | GGA | MEISSSVFQRTSVLVLSLLVLFVAPASASDQVVSKPTDVPAIVIAHLHLPQATGSQMLLQKENSKQYLYVQQAAKQGFMIVDVSRPEQPSLLKRTAESSQATTGDLRIVSPDVAIAEAPEKTPATLTSSAHPTETVRVLDLSDPRNPKTLETFNKVTSLLADGHHGLIYLTNNDGLWVLRYNRPAPLEPEKKKPLCDSNAEIMAMPPDCD |
| Ga0187879_10000007241 | F006274 | N/A | VVKAHQREGEDSSAHKRRHHAIYATETSGLLLIAFLLLVLTVIRYWHAIHWSVR |
| Ga0187879_1000000788 | F080971 | N/A | VRGKLHQISTTGGLLNVEAPLDEKLKVELIFHLGETTIREKVEMLFPMWATQGWLQPFRFVDLPEANKNVLETHLKAFVQQTQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |