NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10000002

Scaffold Ga0187847_10000002


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10000002 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)327678
Total Scaffold Genes293 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)234 (79.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F001117Metagenome / Metatranscriptome773Y
F006517Metagenome / Metatranscriptome371Y
F056182Metagenome / Metatranscriptome138Y
F074609Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_10000002162F001117GAGMTENVLHIPSPLYRCAGPNCGVMKGVSDRWWVMWSSFGDYQVPVMHLAPFDENLAIQEGAMHVCGEGCAQKLQSQFMGNVIESRSRKTGGK
Ga0187847_10000002174F074609AGGAGGMSNEAIDVTCEGCGQTFSAFLHQMADKNSKVVCPNCRESRDCKPTKVAQAEAGTRPAKKL
Ga0187847_10000002215F000269GAGGMVAYLRAGSRKNVLTFALVSLLLALASASEQPEPKPTDVPATVIAHLPLPQATGSQMLLQKETGKQYLYVQQATKQGFMIVDVTRPEKPTLLKRAAESNESTAGNLQMVSPDVAIAEAPEKTPATLTSSNHPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGGHGLIYLTNNEGLWILRYNRPALLEPARKKPPCDSESEIMAMPPDCD
Ga0187847_10000002268F056182AGGAGMADGRSAANKAVETMGHKATPTRKLKKEQAGSSPTMERRAGQQAGTRQKLGSPKVRAHIEKGISELQGLHKLLLSSEIDPDVLVDFRDALNRVRNTAWAAQQFVVRKESGQGSSSVRSLLTGERIRVTYQLCQALGDDLKRTDIEFQAGSLVQLQEVTKALTERLERIIKRLG
Ga0187847_1000000255F006517N/AMLPRIEYSVSVPVPVDAAFRVFQDHDRLLHRGIYTEVAWMEGEPWQVGSRLRYRVVYPVETTISAVVSSVSPPRSISLLNHALGVTAEQNVSFGPDLKGGTRVRMTMDLIGTSTELSEKALEDAVTFVTRDALDTMVSLCQRRAATG
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