Scaffold Ga0181584_10000918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181584_10000918

Scaffold Ga0181584_10000918

Overview

Basic Information
Taxon OID	3300017949 Open in IMG/M
Scaffold ID	Ga0181584_10000918 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21820
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (53.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042637	Metagenome / Metatranscriptome	158	Y
F059370	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_100009186	F042637	N/A	MAIFSGKIIEAYFANSENNAVEIIYEDGNRAISHYLPVDYNNSDFKDLVSEYSTDKIAEATMSRNRRYAQQLSDIVDAGMKAKAIQKNRVSSEEIVRSILNFDPKDPKCKEILFTIKVEIFETEKVKGSKDKEKKSALRTAKTPLELLVAYNDFDD
Ga0181584_100009187	F059370	N/A	MIDVYCVNVGTKYTRDFDSRLKESVAKHLTLEHTFTCLTDKVEKSYDKPVTHPELKGVFHKLSLFQYTGNCLFFDLDIAINDNIDFLAHDFDGLTLVNSSAWKQESLKTPLKFRVTQNTLVNSSVMRWSDQRHVFENFIKRRDLYVRLYTGIDRYIYNEDVKYKYFLGDQISSWQEGVKHNTILLHNQKYV

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