NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10002595

Scaffold Ga0181584_10002595


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10002595 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13822
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012180Metagenome / Metatranscriptome283Y
F046081Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0181584_1000259511F046081GAGGMFWRKGSYEFIQPQEVELETKLSFIDSKELSEGSCAFVENVTDERVVVYWFDKQDPTKLVNTQELDQPMFINTAHPVTLKNLGDKSAVVKYTDLNTVIENYTGI
Ga0181584_100025957F012180AGGAMRINHNKLALAGLFAVLIAFAMLIWSTKVNADELTLEQRVSKLENKVPNLPNGFFVNGEVEGRYNDKTYDSGWDSRGELQLGISTAVPGESLGIDWVGASMMYDSYYALDTTQNNTLVEKQLGFGNDVARFYIGETDAQRMGFAKTPKISVPLIYTETNYRIDHREKTVLTFGGWEYDNEFDFDSYRLKRERPWGVSLGWDNDGNVGYATGTVSLMGYADVSYMRITGVEDAGTKDQEGYSIGGSLHRFGVPMLWGVELWDDKNTGAYTKDDRLDYGVMYNVTDSTYVTAHRTENDDLGYDITAYGIVHNIVQNYDPSKRPDKQDGLELGLYLHDKEQTSVFTGAHTDYGDQILASIRYK
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