NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10008308

Scaffold Ga0181584_10008308


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10008308 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7722
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002412Metagenome / Metatranscriptome561Y
F017421Metagenome / Metatranscriptome241Y
F046716Metagenome / Metatranscriptome151Y
F064453Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0181584_1000830814F017421N/AMYTLEKRKMIYIMIRKPVWYHTHCITPWPGTPLWYDPSWVIGDCELCQMDVEGQDWWNGCSYNNSQKRIFDGIELNKKYWV
Ga0181584_1000830815F046716GGAGGMFRWIKRLWGRYMRFTLEQYDASPVVYKIGTKKYIKVKKYTKGPVPRTRYEK
Ga0181584_100083087F002412N/AMLLRVIIIYCTLTVTAVALHENTFAVFELKEQLQMLYINMWELLTQLEYVRPDQRVTVYEEIQHIRSEIQRVIDLITQHDLREHP
Ga0181584_100083088F064453AGGAMIYTDQENEWLSKPKKYKKSNTNKQRRVEETEWDCQGGHWFVNPTRAWGVKTTIEVDGKEYVVPVQL
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