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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017949 Open in IMG/M |
| Scaffold ID | Ga0181584_10035004 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3609 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019821 | Metagenome | 227 | N |
| F021526 | Metagenome | 218 | Y |
| F026851 | Metagenome | 196 | Y |
| F091966 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181584_100350044 | F026851 | GGAGG | MTPKEAQRFTKLLHNTDDMTPLEKAEVGRLKTAYLSAVIQETEAYVAAKEAYEEAKEHLDLQDPGEREVLMTLLKSMRDGEKNVLIIAAELETHFGISA |
| Ga0181584_100350046 | F091966 | AGAAG | MEARVKLKTACYNSKVTNQQGVTMTHTKQQIITILENPAAVDAAIIILANNQTAGELRSKSTHNLNGEGFSAAYGKVGTRFYEFVTGIQMSTGQKKWPARSLSHPKAEQVFRRYVGHKHKTVVDYARHIAQLHWKQLGELFNMNFDVPAPQSLDVEPKVDKNRFVQFSCQLVRQSPKAFLVNIGGAEHWMPRSKCAISGGTLSIPQWLAEAKGLEV |
| Ga0181584_100350047 | F021526 | GGAG | MRYFSIDYRSPPSGMGQIIDTTKPEKIGERWNYILITYSGCGPAYDPTYNMTKHFTSKQAEEEGWAGPVLEEIIRFLRAQKVTHVYDSELSYNYEGGNENDFEGLFTLDRWVEIMRSFL |
| Ga0181584_100350048 | F019821 | AGGAG | MTITNKTTLQELIDLGLFKEADIQKLNKKLDGAADRAERKALLEGTMSAIKALVASDAHGGNRYWSVKPAAHSLGFMTYIEADRGTILKALTKLTESGFLTKVGLKKVDGKLTELDKSQVNAFQLRYIVTPVEEADAAADEAAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |