NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10129331

Scaffold Ga0181584_10129331


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10129331 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079409Metagenome / Metatranscriptome115Y
F092982Metagenome / Metatranscriptome106N
F092983Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181584_101293312F092983GGAMNIKEEIIKATTKQKDDELPLLEDLFDFCQSEDRVHPFGLPYETGPFAVIRNHKDFILNIFPPNQCILGAAEDALETKRERLLTHIFWAFKKGLIFEFNKELLKLSDEEWDKESDSLILKEEIDNLRTFSIHEISNVYDSLEQETKV
Ga0181584_101293313F079409AGGAGGMTKYTLTIAGNNDKIYKEGFNVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181584_101293314F092982AGGMKYVVAKLIAIFLGFKIAFIVLNDTGLIPNPIFVVSVTILATTLGYLSCKFFYNGLLSVFEDHRPSEEQDRDPIL
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