NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10001210

Scaffold Ga0181607_10001210


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10001210 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23196
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (77.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049596Metagenome / Metatranscriptome146Y
F074890Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0181607_1000121032F049596AGGMAALDFGMALARGMLPKSEKAQKDLLNLAGGRNIFKSEDWWNKAVDKQISEGYRTVERQDKEFLMPSGEYQPGKRQVSTTYGRTIMGQFSPVTGPFGMPYTPSYHPLFGYGGGVSARTSVSYEAPEGAVFTVDPRTKEKQYTSRDFDVFGKREDYTAGELSDIETSAKAGATRAKRQTEQSKASQKRLRRGTGGLLAKAPSPEDTGLPALGATGLGIVGDLFGAKQEL
Ga0181607_1000121035F074890N/AMWSYHLYWGFNLGFEIYEGEVDGDPVDYFLVNIGPLRIQRAEWS
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