Scaffold Ga0181607

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10005344 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10873
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (46.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10873

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (46.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008746	Metagenome / Metatranscriptome	328	N
F021101	Metagenome / Metatranscriptome	220	N
F078652	Metagenome / Metatranscriptome	116	N
F105097	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000534412	F021101	AGAAG	MWFAPAFIGIHSFFEKYFSPKKTHVIVNLFHMASVFTWNPGFVVSKSYFLADFFLLLNNREVYPGMWHILLAHHVVSYVILATEEDNEDVDLALKWAEVSNMSLAAYELYPNVFTKTMRVIIYPWSRCAMLPLCLIECTKSLGVKAFVLGVPIVGGSFWWSWKILKDFLRK
Ga0181607_1000534413	F105097	N/A	MFRAIGIAVGMWGASTALTYAHYRFCFPWFTVAEPCLSIQRSSVFLNTTIQNYGYMAVGLLVDAALKLMPPVMRKTIKEKTPKEE
Ga0181607_100053442	F078652	GGA	MQATLKVQSSELGNLAGYGAKFCSPREAAEKFWKRNRPDAFKEYVRIHGTPTWKKKDDFVYGNANAKQIMEEAQRVKTENTGDIGGVLKSVADDKRASAFTAEQKQFLDEATRTKVFQNHGTRKEGSTLDQWCRENGKNAIKPTDKYTLRIHEQVVIVGLIDGRTEDDELLEFKNRAGGRLFNEIRSYEMAQCQAYLRMLGIERGYLIECLRREGQEPKLNTLPFTRDDEFWEDTVERVLSNIFDPRFECFRVTETGQSAS
Ga0181607_100053449	F008746	N/A	MRFNKNGFLKSLNKNSKEAIIALKSAPELKKAVIVDVLQRFNKILKNAKFPDDVSMVRNGFFLYGGQVIQEVFQQTKKLVDPKIRAAMEMTPSSDYDGQLILKFKKDGKLSRIENISKETKLKKFLLRAMEKAAEPYGPLFKISVATKLPHVIDISLADAKTGFDYAEIHVVNGYMKERIGNEYTERGADRLAQTKCCVETLKSLGLPVLNLKSLLYDQLFALDSMLTGNSHRKAVRPDKCQQRFVRMTFIYDLMKKTKKSIPKDVQTLVNEIVMRMDQPKYKNYFKQCSVKIH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181607_10005344

Overview

Ecosystem & Geography

Associated Families

Sequences