Scaffold Ga0181607_10006150

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181607_10006150

Scaffold Ga0181607_10006150

Overview

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10006150 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10092
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035273	Metagenome	172	Y
F040601	Metagenome	161	Y
F046983	Metagenome	150	Y
F085562	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100061504	F085562	GAG	MDDFTRKSVEKFDKRTVKAAEKLIDSSPELKKIRSIKDGLKPTEITTGVNDQQYKDNYDKIEWGKNKSKPSFKVRVNGIVQNDEEE
Ga0181607_100061505	F046983	AGGAG	MKIPESWTKESTHVTLGVNTMSLVGLSLTWGHMLGYINLWFLPLTIISLLAGFGNEIRKRDV
Ga0181607_100061506	F035273	GAGG	MNQPFKVWDSQHQSMTRYTPKKLYKIVVDYPHTNRELEFIGMDRGSCIMQAEVAREEGDELILMQTEEEITVLQKEKV
Ga0181607_100061507	F040601	GAGG	MANVEYIIKVIEPDKEYLKKFNTYTLDDCRQQAQEYLWSCPEDTKYIYVATRLKNESTV

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