NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10022300

Scaffold Ga0181607_10022300


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10022300 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4750
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046649Metagenome / Metatranscriptome151Y
F082623Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181607_100223002F046649AGGAMAYQNNIASRIISSENITSTGTSAQSGPAPFGATIARIATSANVNIVIGPSPTATAAGTLIEPADASYFVVKPASSVGGTDGEKIASIGTATVNVTWLEG
Ga0181607_100223003F082623GGAGGMARQHPFGHRLVKSERVNITTSSAQSGTCPFGASIAQVRSHGTTGAPLNYVKVGSNPVATTDGSSSFIHNGDAEHFIVRPDSSPEAGDGEKIACIADAGTAYLFIDWLES
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