NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10026940

Scaffold Ga0181607_10026940


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10026940 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4219
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F009521Metagenome / Metatranscriptome316Y
F015990Metagenome250N
F027830Metagenome / Metatranscriptome193N
F062678Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0181607_1002694011F004603N/AMIFSININGNIVDWCYNLDCQEKQYHKTWIPKLSDIQIITKDLDGLTISEVKKIILEDIQPDINMVKEHNNKLARARRIRA
Ga0181607_1002694013F027830AGGAGMTNNMTFNTAFGKYSAHYRDQGFGGELPYISETHSRATGEGGYLLRDENDRHIAYVTKEGKVQA
Ga0181607_1002694015F015990AGGAGMTGKGSGRRKEDINKIRNNWDSVFNNKKDKQLITEVTITFNMKGNPTLYDMKKEVEKMCKENKIVCTTVTKYINA
Ga0181607_100269404F009521GAGGMKYQIIINNGSLKGFIAFKGSCLATMQDKYKRLEQQGHKLKLIRGK
Ga0181607_100269407F062678AGGCGGMTQQDQNALKKLKRKYPSLPIVGSPKDWERIEKMLSKKDFELYKLITKRGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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