NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10027645

Scaffold Ga0181607_10027645


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10027645 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4152
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002528Metagenome / Metatranscriptome551Y
F038600Metagenome165Y
F046345Metagenome151N
F048960Metagenome147Y
F057323Metagenome136N
F073484Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181607_1002764511F057323N/AMKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKENDIKLTLPDHVTDTYSFMDWFYDAENSLEIGTDFFVNLQYKELLSE
Ga0181607_1002764512F038600GAGMSVTIYLTDHHGRKVAFFYRIDSERYSTAPQLIWCCRQHPEYQGRAESKEDFIEQCKSVMKELNKISQNNRST
Ga0181607_100276453F002528N/AMKKKTQTPTTTTTLPSSEVDPTLPIIRIVSEEEEMHVKLELEMEDETHDMLVKWGKEVASDEDYINIALTDGLKHGISSDK
Ga0181607_100276456F048960N/AMKPIKVINRIPTPADQIERETAKLFNTKLNKFLGYAFPLLCGLGWLLILLAIFSS
Ga0181607_100276457F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIDYLKEFNVDSDGSVLIQSDYEVESFYEDCTYRQKKDIQSGWGANMLFDAWTFLNYVGWDACEGLELK
Ga0181607_100276459F073484GAGMNALERSDMKINQPTENSLYVTIGNFTYYFDDSIEGECTVNRWHKDDDDINEPELFQTTEDE
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