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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017950 Open in IMG/M |
| Scaffold ID | Ga0181607_10051373 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2799 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009459 | Metagenome | 317 | Y |
| F027168 | Metagenome / Metatranscriptome | 195 | N |
| F044460 | Metagenome / Metatranscriptome | 154 | N |
| F048912 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181607_100513732 | F009459 | N/A | MKEITLEPTIMIEELMYYIHQNEMGGDFIDPDNRFFPLYLELQKLLDKVNNERHDLYVSVSADETK |
| Ga0181607_100513734 | F048912 | N/A | MRDYDSWLTSFLDYEDDDGLTDEEREELKDLYEAWVIDQYEQTLD |
| Ga0181607_100513735 | F044460 | GAGG | MEHLDESISALVTKGYDFFWSNNELCYDSELKVVRSDRPRVRPPTWFCFMNEDERERLTK |
| Ga0181607_100513736 | F027168 | GAG | VNAIEAEMKRWGRATYRQFQQFYKESERGSELDSSKRVLSKLAPQLADPIEDFFNRFASDDSPSMPIWLCYIADFHPQMVAQIALKTVLDKMYAETRHFSRLASEVGKAFEEIARQRVAEHTVAKNKMFSVQKPKSKRSKMQRFYTVEKNNRRFTCWETRLKVSLGAWLLGEIERHTGLIEFRIERFGKKLRKDVLLSAKFSDWVRRFDTWKEMLDPMRMALPTKPRDWVDFYSGGYESFDDPFVMNRPNGSNYEFASMKNLYVSVNNIQSVKWKINTKILDVALKCYELERVFDFHEIPLQPYLENGHERPEELREWKFKQDKIRRRNESNRSKRLQHAKILHLAKKYKEWDDVYFPARVDYRGRVYYMPAYLHPQVTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |