Scaffold Ga0181607_10093979

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181607_10093979

Scaffold Ga0181607_10093979

Overview

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10093979 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1907
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058817	Metagenome / Metatranscriptome	134	N
F059919	Metagenome / Metatranscriptome	133	Y
F086837	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100939791	F059919	AGGAGG	MIQLDPASLAIGYVAGTMLCWYLNQTLNAKESEYEREDDGATEEEYMHYKSSIYGWNYPYDRATTDRK
Ga0181607_100939792	F086837	AGGAGG	MRQYNCYDIKTVNTDVEYFNCTVFVDDIDLSGAVDRQENLVAISGALENIVGEVDSFSYEEVL
Ga0181607_100939796	F058817	AGGAG	MTRNNHGGSRMDNINATLLIAALEAEGIVEPCEDIGSHPLDWMEVVGVDLFDEGWNPEEA

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