NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10002200

Scaffold Ga0181577_10002200


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10002200 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15400
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029594Metagenome188Y
F051163Metagenome / Metatranscriptome144Y
F082266Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_1000220010F051163GAGGMAFLVDTVIIDHRSFAQKLWAGFQNWCEVVGYSRASSHLASLGYHKEAKECMMQIAKLKR
Ga0181577_1000220011F082266AGGAGGMFSTDYLTNVWIDAIQNAKTTWVNTWVKDEAMSKPLHDFIKTQTEFTKDAMKQTTTFANAAGEAMAKMVK
Ga0181577_1000220016F029594AGGAMLPDEMEAEKNRKIIVSQAETIEILKQNVLDLQEQLNNAYIRIRKLTENKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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