NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10002519

Scaffold Ga0181577_10002519


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10002519 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14324
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (93.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027807Metagenome / Metatranscriptome193Y
F034404Metagenome175N
F040054Metagenome162N
F048234Metagenome148N
F066271Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_1000251910F066271AGGAGGMCVQSQRQYFGERHHIVVTDKIAELLTRLGRDKGIGEEEYLKRLSRHPNEDQFVAEIARHYG
Ga0181577_1000251913F040054GAGGMEKMPIMSMPLPDGGAVVCRVEAIMAATTNMQNNQLTDVYIDVACPEGITIDVDIDSFTTSWLAALLTTIDDWRLEHGMH
Ga0181577_1000251923F027807GAGGMSSNEFVPPKLIKSEIIEELDSLVGQLRDLTIRKPKHPQEAHMDARLADFLELAEQDFIRGWTDWEEGIQHKKGQSEAYNAGYADCYEYEARGDQ
Ga0181577_1000251924F048234GGAGGMQIAIKISKQVDDWDEFVDELEGIERTAVADDYDEDIKVVTLLVDRESIDDYYHPVGGRYPIEFEGRTEWVEEVGVCVHSCKWHGHDIINAEQVCSELEGFTYVE
Ga0181577_100025194F034404GGGGGMLQTVTIDWRPVEQGSMPRNEGSYLVAFDDGAVETYPMSHQDIKRGEVRDGQTHGLYWAEGIPSPFDYGKN
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