NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10023966

Scaffold Ga0181577_10023966


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10023966 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4460
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012206Metagenome / Metatranscriptome282Y
F032262Metagenome / Metatranscriptome180Y
F034158Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100239664F012206N/AMSNDIFDFLKQSDSAAGDYVKLQDGDKKSLRIISKPVMGFQLFVDGKPQRWEHDAPRPDHVPATNERGEKPKKFVAFIVYEYAGQSDSGRVKVWEFTQRSIIDQMAMLFREEHWTAFELVVARVGQGMDTKYNVTGIKSPIEETLLDFASKAGDYIDLAKLYSGESPFLQELPELDAKQTKQEQDDSLPF
Ga0181577_100239665F032262GAGMSNGEDLLALNLAWVGWELARWQDVVDWSISAMGALTLLALNLLRLKRALNKQGKVDNEG
Ga0181577_100239666F034158N/AMAEEKPRRGGAARALEALAEHSGQRLRWSTRNTMGGVIISTACEQIVINGITWEAVALCIVGILPLALSTLQP

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