NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10030898

Scaffold Ga0181577_10030898


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10030898 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3878
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026260Metagenome198Y
F032652Metagenome179N
F033013Metagenome / Metatranscriptome178Y
F035748Metagenome171N
F038240Metagenome / Metatranscriptome166Y
F103222Metagenome / Metatranscriptome101N
F104068Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100308981F104068AGGAVKLVTITESTNGRVPLQRLPLIQRNPVGQPRYYWNEARPDLKYTSITSILSATQSENTKHALRRWKQKIIAEGGDPDETRDQAARRGSLIHDWFEA
Ga0181577_1003089810F103222N/AMDREKLVAAMQQEIKEIVALQSMLKNLQKAEERGYQESDQRRIDAIADLFAASNESLMSSYFKMKDEQDR
Ga0181577_100308982F026260N/AMKRTFDTASAVKTLRDGLAKGYWTLEDLDTPPPGTQMTFADYRRYCVAQGYLGKEPVYRNLLREAEENQQDDFIL
Ga0181577_100308983F032652GGAGMPFVVLPPQLVDECKQCAAQRDYNRRSSIDYSSDRTNDKSIWSFMGVLGEVALLRYFRLEIDWEYLSTDKGFCGVDVGKIWEVRAMSKFGNRLFLWSDEVTKSSKLAYAWSKVVVDPDSGMCNICGWAMGYEIAMHGVHAQYDCKRSSYFMDNQKLRRHICPSDDQDEAMKYHFMYRDIENETHF
Ga0181577_100308984F035748N/AMKLYAPEYAGMTVWAVADPKSGKGAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0181577_100308986F033013N/AMAIQLTAKASSTKTVMLQIDPDLYARIKAAAKQHNLPASAAMRQILEQGIEQIEANVG
Ga0181577_100308988F038240N/AMAIPAGNKYKVQVLLDPKAYEAMQREIIQRYDTPHRVTESSLANEIIKSHYAILEYNHE
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