NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10097196

Scaffold Ga0181577_10097196


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10097196 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2043
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F002942Metagenome518Y
F004131Metagenome451Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100971961F001873GGAGMKWWNIAAVLAVLAGGADAEILMMSHDFTEFEHPFWATEADGKGDLIQWDLTDKCGGGAVWLNADGFHNNHMDRQYTAHGYRYGVKRIPGAPVDDISDFVTNDWIQHHRDGAVEFGGNDSRGMVEFYAEQDISLQPGFLTVTLSNDREFAIWKFNGRVVYTHESGENNLQTFKIDIPDGLDQMRFEFSGSGTADGVIEHIEYYPDNTTVPEPSLGDLIDLIGNGVGGLIGW
Ga0181577_100971962F002942AGGAMVMTEEQFTAFCVLLAAVSVPSVSLLYVLAWELWRYAKRAEQ
Ga0181577_100971963F002942GGAGGMTEEQFTAFSILLAAVSVPSVSLLFAGAWDLWRYATEKGSTNE
Ga0181577_100971964F004131N/AMRAKRTTVVADVSQFPFSVMRRQLITPLVREAAELLWPAERRRVTVLLRAPEFWDENTNADLEASEELADICFDLWVEATT
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