NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10107127

Scaffold Ga0181577_10107127


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10107127 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1931
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007537Metagenome / Metatranscriptome349Y
F022462Metagenome / Metatranscriptome214Y
F103092Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181577_101071272F103092N/AMANLNNQGKSPEKYENSAKAAWYAIVGMIVLLVAMTLFGGCSTTKKVDECCKTEKTSAK
Ga0181577_101071273F022462N/AMRKYIRILEVPIYLLIIALACLERGDTVVAIVLILVSMGRLAVNGMTDDFNYKK
Ga0181577_101071274F007537N/AMKRLLYVLLIGVGLTSCTKEEFEIETNYQFEMTGRSTQDINGYYRVTLNPDTLKQTLHRFGAYVTNVDKWNLPTKVIWRCDAFWYLQDTIGYTYIEIGNVPTGESVWSWENFAVTGFEGMTVPIVNGTSHADPAVDSAYCMMAPIGAMIGDTVTIYGQAWFEEGDIIKYDSINVIFE
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