NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181583_10159947

Scaffold Ga0181583_10159947


Overview

Basic Information
Taxon OID3300017952 Open in IMG/M
Scaffold IDGa0181583_10159947 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1500
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012837Metagenome / Metatranscriptome277Y
F031303Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0181583_101599471F031303AGGAMEAIKKLRDKNIFNEQSIVESMIEKTWMGSPVIKRSLLRVRKVGEDDCVCEELGSADGKAYKIKYINILTVDGQEPNELSAVYGLGQKRA
Ga0181583_101599472F012837AGAAGGMRKHHNRLYYGRFRHKTTFKVPGSLMFYPTTDEYLGTIKERYPDHPDMHYLSEFVMHNRKTMKFRFQDRKAIFYSDQRLAQKLIQRFWDYWIASETVDPRYGDIDSDTVGCSRLPHGKYQYQVYLKKDAQLHISESQRSSLWEFLERNVDNCLVSNYNVLDYLEAKNPYCFGGYFYVKEEKFLTPIYMMAQAAIDKVIKYRKVKHGSDKKVKR
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