NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181583_10293695

Scaffold Ga0181583_10293695


Overview

Basic Information
Taxon OID3300017952 Open in IMG/M
Scaffold IDGa0181583_10293695 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009139Metagenome / Metatranscriptome322N
F036244Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0181583_102936952F009139GGAGMRFLIIAAFLSSLSAYAEYKEDSFNEEIIRIPIGFEQTQLARTPKILTCIGEVIDFSSITLKRLIAYRDKREVIYSPETYWEKISFGNQLSVKNFKDYYLIGKAGDNLYWSSNQGSAKLNLKTDRFTANKGGIQLQAICKLRHKNWNEFGD
Ga0181583_102936953F036244N/AMIISTKLVHKEHKHTTLKVLICTIMQFTRLYFVVFLSLLSQFTFANGETESDESLLIELQSKLQEVINWECSPDNPSLGKFINLKCNLLSTGD
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