NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187817_10007681

Scaffold Ga0187817_10007681


Overview

Basic Information
Taxon OID3300017955 Open in IMG/M
Scaffold IDGa0187817_10007681 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6047
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F005810Metagenome / Metatranscriptome389Y

Sequences

Protein IDFamilyRBSSequence
Ga0187817_100076815F005810AGGAGGMNEKEYLQQVATRAGLQHYPQQGPWGGKSGSAMGTRDGYVMVVGFRRDRRGANVMILLRFKKLEQPELVKSAVKSVTIKKGKLSAVGNDFLRWEWKYSFTKPKAEEVAKLAENLRTAIKPVTTGFDGRCEQCASTSTPSLTLMNGLPTYICAGCQEKVRLELNQAAVNYEAITPNYPNGLVLGIGAAALGGLAWGLVAYAINYIFLYGAILIGYFVAAGVLKGTGKVTRFGQIIIPILTVASVLFGDAIFYTLIVMKDQHVPFSGKLLKVIVVHLWEIESKGSSGVLSLVFGLVGAGYALYSERKPKFQAVFQPLGAPNA
Ga0187817_100076818F000528GGAGGMGEWKAQLSLRVRQELRREMEEFAARERRKLRNVGELLLEWSFAQLKAAGSVDRLLKYRLGKRTEK
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