NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187817_10053441

Scaffold Ga0187817_10053441


Overview

Basic Information
Taxon OID3300017955 Open in IMG/M
Scaffold IDGa0187817_10053441 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2493
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001133Metagenome / Metatranscriptome767Y
F001851Metagenome / Metatranscriptome626Y
F005764Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0187817_100534411F001133AGGTGGMWTDKLTDGVIELDTPIGPRYVQPNLLERAYLIWTFRNFFSLPPQVLRPWERRLIDRLWSGNRLVSLSVVGVQDRPVIGRIERRAAAKAEVVPIRTPASKFETCRDRATPESSVSLINNSTKLVTAEISLSG
Ga0187817_100534416F001851AGGAGMSATSVFVGLLLVLFTILMFYRMRKLKPQIAGLGSQMMCPSCGLITSRLKASCLECGQSLPSGGRDAIVEK
Ga0187817_100534417F005764N/ARNGGSLMEPILYSLQAVLRGALILGLSLSAFAQIPAVPDASGFPLGRKTPDFPLTALPPAPIPHPVFEFRDIRIGDDMKEAERTFLALKVPSLSSKPGLCGSDGRNRIETCTDVLDTGEYVNMTILDRRVAQIYVSADRRTQGNTFNSYVLALGTKYGRPDRLETKYYRNGVETGSSGEHLRWSNGDQYMEGSETERSITIGSRALDAEIAEQEHADERN
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