NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181580_10097017

Scaffold Ga0181580_10097017


Overview

Basic Information
Taxon OID3300017956 Open in IMG/M
Scaffold IDGa0181580_10097017 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2162
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033413Metagenome / Metatranscriptome177Y
F039396Metagenome / Metatranscriptome164Y
F061833Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0181580_100970174F061833GAGMTMMTFETALLNSDYTYDPQAGSFFKEDSKGNVHTYMHIEDDTWNYEKYDENDKVLASKSFTL
Ga0181580_100970176F033413N/AMNNTHFANLFSQNINLASEFVTDFTRTFTSNVFDKYTRKDGKVYIKHSVDRNTYQDVFAVEYMIYEYKGCWVGNQKTVATFDVFADAVACARNVQLPQDSISEGDALTLMRN
Ga0181580_100970177F039396N/AMASFCNGNSWSKFDAYYREDCEHDDYMTAEDYDRKEYYRNGWDAERYNSQRW
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