NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181571_10215859

Scaffold Ga0181571_10215859


Overview

Basic Information
Taxon OID3300017957 Open in IMG/M
Scaffold IDGa0181571_10215859 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1237
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079409Metagenome / Metatranscriptome115Y
F092982Metagenome / Metatranscriptome106N
F092983Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181571_102158593F092983GGAMNLKEEIIKATTNQKDDELPLLEDLFDFCQSEDRVHPFGLPYETGPFAVIRNHKDFILNIFPPNQCILGAAEDALETKRERLLTHIFWAFKKGLIFEFSRELLKLPEKEWGRAFDNQEWEWEWEFDNLRTFSIHEISNVYDSLEQETKV
Ga0181571_102158594F079409AGGAGGMTKYTLTIAGNDDKIYKEGFTVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181571_102158595F092982AGGMKYVVAKLIAIFLGFKIAFIVLNDTGLIPNPIFVVSVTILATTLGYLSCMFFYNGLLSVFEDHRPSEEQDRDPIL
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