Scaffold Ga0181571_10464608

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181571_10464608

Scaffold Ga0181571_10464608

Overview

Basic Information
Taxon OID	3300017957 Open in IMG/M
Scaffold ID	Ga0181571_10464608 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	777
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020186	Metagenome / Metatranscriptome	225	N
F078048	Metagenome / Metatranscriptome	116	N
F093689	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181571_104646081	F078048	AGGA	MADFQDLRVQRNLFGDERSPFNGWVYESNYKMFVCDPDSTPDSRAKFDSVGHRMMNAINPNW
Ga0181571_104646082	F020186	GAGG	MAISSSINPNRPQRGKRSVKLTGEASPQEIPLYAGTVTLIANGAGTTFTLANGQEGQMMTFVASSNGAGNINDIRVNCRARYAFDSGGTRITGSSSTAEWAPFTAVQQHSMAWAVFTDGEWCWSQGTNEE
Ga0181571_104646083	F093689	N/A	PIASRFRQIFDLLDNGEQPPIANAPNEKYADVDAVTTLAGGGMNGPKHPADIRIKDPRGY

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