NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181582_10081102

Scaffold Ga0181582_10081102


Overview

Basic Information
Taxon OID3300017958 Open in IMG/M
Scaffold IDGa0181582_10081102 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2376
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021750Metagenome / Metatranscriptome217Y
F037632Metagenome / Metatranscriptome167Y
F098929Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0181582_100811021F098929N/ATHIYDPRLVKLGKYMAVYASVHNAEDLAAAKAAGFTLFAWCDSDQAIAPKRPRRKGPKRDAWSKALPTLTVLAGEKFVTCPEIRKGRDFVTCTGTKDSVACNMCVNGRKNVLFPCH
Ga0181582_100811022F021750AGGAMKTFNIKCVTLEDFVDTHELDLYAVDDILLSSKFSYGTNDDTLIGYETLCDMCDINPLSTYSGYGLMVALGS
Ga0181582_100811027F037632AGGAGMANKIIVEFSGWVECDSDKVKFEYIGPEQYGLMSTGGSITGTEWLKLSEDDRDNYMLEDCIEAQKTALDGSYENIDVIIADENNNEVTAIRTHS
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