NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181582_10261973

Scaffold Ga0181582_10261973


Overview

Basic Information
Taxon OID3300017958 Open in IMG/M
Scaffold IDGa0181582_10261973 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1149
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005467Metagenome / Metatranscriptome400Y
F010653Metagenome / Metatranscriptome301Y
F043151Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181582_102619732F043151AGGAMIPYTAQENEYLSSGSYRKSNTNKQRRVKQEPDLRKHDWAIRTTIEVDGKTYIVPVQV
Ga0181582_102619733F010653N/AMLLRTFVIYALMTVCAVAFHDNTFAVFDLREQLQWLQINLWELLHQLEYVEPHQRLVVYEEIQHIRSEIDRIVAELVAHDRAQHPLP
Ga0181582_102619734F005467N/ACQKDSSIHRAYVQLDIESADILHDSLCERYDLVQVCDVKQSEVDPALLITPAP
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