NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187779_10000232

Scaffold Ga0187779_10000232


Overview

Basic Information
Taxon OID3300017959 Open in IMG/M
Scaffold IDGa0187779_10000232 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40670
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (88.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010351Metagenome / Metatranscriptome305Y
F057448Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0187779_1000023223F010351AGGMGFTRNQIYIAVGAGALMVLIFLGYLAWLNNQGPVLRRSDQHDPLTGIPDSIKLNPLRDRTSEQVAAQFIRAMRDGDCRNQLSDWERDYRRKYAAFICDSEAKHPLLGWQLAEWEDRPPLRILEYRSKRLTAPGQRQVYAGLFSVTLEKHGSLWEVTKYDALY
Ga0187779_100002325F057448GAGMKLLDRACAGALFLLAVVECWLVPRDYTGRIWIFGTGLALLFTAMLNLLRLRNGYGVQGLRLFCIGANVIMTVFVMALILSIGWPRTLANPQVLLLLVLLGSETPFSLAKNP
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