Basic Information | |
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Taxon OID | 3300017959 Open in IMG/M |
Scaffold ID | Ga0187779_10301481 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1025 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Colombia: Department of Meta | |||||||
Coordinates | Lat. (o) | 3.8381 | Long. (o) | -73.3194 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012728 | Metagenome | 278 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187779_103014812 | F012728 | GGAG | LNRFGLVLALVTGLLFVESSAMAAFIFRAGDSVWVDGKRYTWEEWKKIRDDPELVRQSQEGPSQAKAIPPGQPRAASCTTAIYHDEFPSDDEQFQCSSGLGTLTRQQILEKGWKVDLIEKLPPPSGQPTQSPRGLPLFSYKLVISR |
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