Scaffold Ga0187778_10001024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187778_10001024

Scaffold Ga0187778_10001024

Overview

Basic Information
Taxon OID	3300017961 Open in IMG/M
Scaffold ID	Ga0187778_10001024 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19913
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000437	Metagenome / Metatranscriptome	1146	Y
F070486	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_1000102411	F000437	GAGG	LNCEFAVREPCSRFLSACAVCLLIAGVARTQSTEKKAVWKSVEFAIVKFNDEAPKSWNLYHTEKKGVLLLRLWKRYLLVNVKEEEAYEIDPQTVKPAGDNVEWSLADKPSEPIDTIEWKSRDIGSMRRVAFRLGKNGHVVELQIPLKMNGEPMY
Ga0187778_1000102421	F070486	AGG	MSYEQAMKVASRDEAFKAAVYAMNTLLIHKGIYTQQEFERLFVEWVKKEESKKARARDANHPEAAFA

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