Scaffold Ga0187778_10011376

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187778_10011376

Scaffold Ga0187778_10011376

Overview

Basic Information
Taxon OID	3300017961 Open in IMG/M
Scaffold ID	Ga0187778_10011376 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5540
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061171	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_100113767	F061171	AGGAG	LKPVTLPRVRGTITCYDLVAVLVSATAVPTILCAASLAAWLVLVHSHGVFSSAALGAGRLWLSGAGALLGCGGFLACRVLEGRSYMRNWVLYVYTFAFLVFSFVLLVEWFEVSGATGFWS

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