NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10111728

Scaffold Ga0187778_10111728


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10111728 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1704
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013127Metagenome / Metatranscriptome274Y
F016552Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0187778_101117281F013127N/ALSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDSTSPVLVRNAQEAIAYATAALAAWARGSPLAEKWDDAAADAIEDVVTAAVRREQQSARRRRPFSARSGYTPF
Ga0187778_101117283F016552N/AMAFFLGWLALALHVLPGAVAPAHAQGTRKDDIVFNSRGIPLAGATVRVCTMPATGQPCTPLALIYSDSGLTQALANPTTTDGMGNYFFYAAPGQYEIEISGPQITTKQIPNVVLPNDPSSPTFSGGVSAFSLTLSGNLTVNGSTTVVGNLASGTLNLSNQGTPPGAANSGTVNLYTKTADKRLYYKDDTGTEIGPLGPGTGAQTNAINTFTALQNLDSGLHIKGPDPYNDLARYGGYFNGSPPATTASCTNGSTSITLASALDFQDA
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