NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10081676

Scaffold Ga0180437_10081676


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10081676 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2811
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009006Metagenome / Metatranscriptome324N
F034915Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_100816761F034915N/AYPRGTRRRQLAELLVAVGWWPPEIEFETKDLNTVVDVLEEQKKQQRVKH
Ga0180437_100816762F009006N/AMSSRSRKSSNVSSISARVEVDGLNEALRTLRYIDPQLRRQVDKQMKETVGQDIIPFARRLYPATDRVGNWGRWPRGAGYQQSTVQRGVKLRIKTSGRQDQISGLFLTNSNGPGVIFSTAGKKSSGVAPTRENGSGNSAAFIERLKRFGDPMRALWPAVLEKRDTLEHNVNKAVDDLMKTISKELR
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