Scaffold Ga0181589_10397820

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181589_10397820

Scaffold Ga0181589_10397820

Overview

Basic Information
Taxon OID	3300017964 Open in IMG/M
Scaffold ID	Ga0181589_10397820 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	908
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040951	Metagenome / Metatranscriptome	160	Y
F044932	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181589_103978201	F040951	AGG	MIISFEEPPSRNHFESEEEYQKAYREWKELFDVMWEKYGNISLT
Ga0181589_103978202	F044932	N/A	MQKIKRIITILIVSILTSKVCASTKDIDEERVWDIKNIDNEFIWYRVPGQTVWGHKYGFIKHSSNCDTDNFVVEWSSYEDMKKYEGKIIPLQLENNKGQITRIKPYLSYVNNFTNIMQVGFFTDDQSHTASSRAFDIFNNDSDTVTISIGDEYENFDIKSDTFFTKGLREAKRNAAIKCRKLISNFAVKVV

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